Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRNVTAKKKVVKKNIARGVVYISATFNNTNITITDEMGNVICWSTAGGLGFKGSKKSTPYAAQQAVESALSKAKEHGVKEVGIKVQGPGSGRETAIKSVGATEGVKVLWIKDITPLPHNGCRPPKRRRV
4JV5 Chain:K ((1-116))
-------------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTGAGREQAIRALQAS-GLQVKSIVDDTPVPHNGCRPKKKFRK
General information:
TITO was launched using:
RESULT:
Template:
4JV5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34768 for 865 contacts (-40.2/contact) +
2D Compatibility (PS) -12881 + (NN) -7953 + (LL) 1504
1D Compatibility (HY) -4800 + (ID) 3000
Total energy: -61898.0 ( -71.56 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_4JV5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JV5-query.scw
PDB file :
Tito_Scwrl_4JV5.pdb
: