Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQSHQNLQSQFFIEHILQILPHRYPMLLVDRIIELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQTGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
3DP2 Chain:A ((8-159))
-------LQSQFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAERE
General information:
TITO was launched using:
RESULT:
Template:
3DP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119877 for 1174 contacts (-102.1/contact) +
2D Compatibility (PS) -15715 + (NN) -1086 + (LL) 488
1D Compatibility (HY) -24400 + (ID) 7500
Total energy: -168090.0 ( -143.18 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_3DP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DP2-query.scw
PDB file :
Tito_Scwrl_3DP2.pdb
: