Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVVAKKSLGQHFLMDESFLDRIVNALPPLNSLRLIEIGVGLGDLTLKLLDRY-PLKTYEIDSNLCEKMRARLRAEKKPF---QLELVEKDALFL-------KEEEPYFLISNLPYYIATRLVLN------ALKDPKCRGLLVMTQKEVALKFCAKDSQNA---LSVLAHTIGNATLLFDVPPSAFSPPPKVFSSVFEVIKEPLKEKALASLAQAPFFEEALQKGFETLEDFLKACFSSPRKTLSNNLKKSVSYKEKLDKVLDFLALENQPTSVRASEVKDYLKLLKSVLKG
1QYR Chain:A ((17-229))
---------QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARL------QTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIAD-----MHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPV--------------KDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENA-----
General information:
TITO was launched using:
RESULT:
Template:
1QYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108503 for 1410 contacts (-77.0/contact) +
2D Compatibility (PS) -20789 + (NN) -13130 + (LL) 3248
1D Compatibility (HY) -17600 + (ID) 3500
Total energy: -160274.0 ( -113.67 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1QYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QYR-query.scw
PDB file :
Tito_Scwrl_1QYR.pdb
: