Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPIKTYDIKEEELAKTAYATIKTNKGNITLELFYKDAPQAVSNFVTLAKEGFYNGLNFHRVIAGFVAQGGCPYGTGTGGPE---HRIKCEVAHNPNKHQRGSISMAHAGRDTGGSQFFLCFVDLPHLDGEHTVFGKITSA-ESLSVLDKIKQGDIIESVVFSPSL
2OJU Chain:A ((9-140))
-------------------VTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHI
General information:
TITO was launched using:
RESULT:
Template:
2OJU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61340 for 941 contacts (-65.2/contact) +
2D Compatibility (PS) -13657 + (NN) -6043 + (LL) 1720
1D Compatibility (HY) -9600 + (ID) 2650
Total energy: -91570.0 ( -97.31 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2OJU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OJU-query.scw
PDB file :
Tito_Scwrl_2OJU.pdb
: