Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
3K9W Chain:A ((24-172))
---VAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGHYPNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFV----FPSVEKW
General information:
TITO was launched using:
RESULT:
Template:
3K9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123881 for 1137 contacts (-109.0/contact) +
2D Compatibility (PS) -15830 + (NN) -3661 + (LL) 624
1D Compatibility (HY) -15200 + (ID) 3500
Total energy: -161448.0 ( -141.99 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_3K9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K9W-query.scw
PDB file :
Tito_Scwrl_3K9W.pdb
: