Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDLAIWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMGDMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIVGTVFAVLSGQDAEFAIGLAIPVGLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLTFGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAYLKVPMLGVALIGVALAIIYFKQNFKNPVAAGANGAALVGEENEDGEYED |
4F4C Chain:A ((350-437)) | ----------------------------LNFGDMLTTFSSVMMGSMALGL---AGPQLAVLGTAQ-GAAS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F4C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -8225 for 145 contacts (-56.7/contact) +
2D Compatibility (PS) -3641 + (NN) 1486 + (LL) 19580
1D Compatibility (HY) -3200 + (ID) 950
Total energy: 5050.0 ( 34.83 by residue)
QMean score : -0.377
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