Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKITIQEIAKLSGVSVSTVSRVLNNSPSVSAAKRKKIQAIIDEHNYTPSVFARGMVNKQTKNIGVILPDISNPYFISLITQIQKFALDYMFSTILFNTMLAEPDNKNNQHPLTEEDYLKIILEKQVDGLLILGGEIDKEIVPKEYITALNQLNNAIPVVVI--GSKIPELNCLFIERNLKKGVTTLVSHLTALGHKNIGFIGGEAGVKITTYRLESFKEAMTSYQHPVNDDWVVLSDYYTADGYAAMTHLLENSTTLPTALVAINDNVAIGAIRAINDAKLSCPEDIAIVSCDQFMNGDYQTPRLTSMDQHNEYLGKMAILQLISAI-NGQVEPMIINHNPELIIRESCGSKL |
| 1QQB Chain:A ((2-329)) | ----TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLAVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAW----NNLEKQRA-----YLSMMAQKRVDGLLVMCSE-----YPEPLLAMLEEYRH-IPMVVMDWGEAKADFTDAVID-NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQIL-SQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRS----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1QQB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238587 for 2721 contacts (-87.7/contact) +
2D Compatibility (PS) -35417 + (NN) -15646 + (LL) 2128
1D Compatibility (HY) -19200 + (ID) 5350
Total energy: -312072.0 ( -114.69 by residue)
QMean score : 0.556
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