Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LEKKKKFRLFDAVLMAVCVVL---VVESAAPAAAIGSSQFFWWIALLILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRK--WGARVAWLYWINYPIWMASLAVLFVEVITQIFPVSFGTPVSIL-IQLIFVWIVVIVSCYPVSDSKWILNIAAFCKVAIMLCLGVLGIYFAITKGLANDFSGKALLPTFDLESLSFISVILF-NFLGFEVVTTLASDMENPKKQIPQAIIYGGILIAFFYLLAAFGMGAAIPTSEL--STSGGLIDSFIMLIGGVNPFVIIIGIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNDMPTGTSILNGIVASVLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKLDPDRERPFKVPGGKILLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTIVAVIVGEICIWLAGKRKDKGEIKNEND |
3GI9 Chain:C ((4-314)) | --KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDNIITGA-LSILLWMSYVISIA----LFAKGFAGYFLPLI-APINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLF--IFAGLITIHPSYVIPDLAPS-AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYG-GAN-VAYSLAKDGELPEFFER--------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GI9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -336562 for 2516 contacts (-133.8/contact) +
2D Compatibility (PS) -31322 + (NN) -10376 + (LL) 12128
1D Compatibility (HY) -26000 + (ID) 4050
Total energy: -396182.0 ( -157.47 by residue)
QMean score : 0.311
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