Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE
2ZYC Chain:A ((2-164))
------AQAFVDATWPQAAKAAQSLGV-----------------------PAHFLVAQAALETGWGKSQ----------IRNKDGTPSYNLFNIK-----AGSNWTGKVVEARTVKVRVERFRAYDSYEQAFQDYADLVGN-----------SPRYAKVAGKTDGHAFARALQEGGYA------TDPSYADKLARVINGNALRQRLMASAASARGLE--
General information:
TITO was launched using:
RESULT:
Template:
2ZYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144760 for 1152 contacts (-125.7/contact) +
2D Compatibility (PS) -15576 + (NN) 5768 + (LL) 5932
1D Compatibility (HY) 6400 + (ID) 900
Total energy: -143136.0 ( -124.25 by residue)
QMean score : 0.263
(partial model without unconserved sides chains):
PDB file :
Tito_2ZYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZYC-query.scw
PDB file :
Tito_Scwrl_2ZYC.pdb
: