Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDLEQIYILDFTMGLRFHPLIIRKNLPLLYVAFIFLIWIQG-----------VVMAGLPGDFDTTELDVLLAAIPALPLLILYPKKMAMKFQNVQYLLYVCFN
4DNT Chain:A ((898-958))
---------------------LLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4DNT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16758 for 236 contacts (-71.0/contact) +
2D Compatibility (PS) -5241 + (NN) -2297 + (LL) 4336
1D Compatibility (HY) -7200 + (ID) 900
Total energy: -28060.0 ( -118.90 by residue)
QMean score : -0.073
(partial model without unconserved sides chains):
PDB file :
Tito_4DNT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DNT-query.scw
PDB file :
Tito_Scwrl_4DNT.pdb
: