Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKNFKKLKSLHELPTPLILYNCWDVASARAIQQGGAPVIATSSYAIAE-SLGAVDGEHLTFDEMFSVISRIAENVSLPLTVDIETGYARNLEELAQNVERLLAIGVCGVNLEDQLIGVTNPGLCSTEEQCDKIKTIKETAAKMSTEIFINARTDVFFQGRDEAVDLVEEAISRANAYKEAGADAIFIPGLLSPNLIRAFVEKSPLPV--NVMRMDG--MLSNEDLQKIGVKRISYGPFSFFQANLAIQQEVERIFEGGKAL
1UJQ Chain:A ((19-251))
----------------PLQIVGAINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVKSIAKAGAAALHIEDQ-V-----AIVSKEEMVDRIRAAVD--ARTDPNFVIMARTDAL------AVEGLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILANITEFGATPLFTTDELRSAHVAMALY-PLSAFR---AMNRAAEKVY------
General information:
TITO was launched using:
RESULT:
Template:
1UJQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129476 for 1767 contacts (-73.3/contact) +
2D Compatibility (PS) -23661 + (NN) -7341 + (LL) 1772
1D Compatibility (HY) -11200 + (ID) 3250
Total energy: -173156.0 ( -97.99 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1UJQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJQ-query.scw
PDB file :
Tito_Scwrl_1UJQ.pdb
: