Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LKIKKILPQTIKSEVYFIDEIKNFDIVTEKMNDNFYTYRLGSNVMMWLNDEGVIGEIECIFPAQIDNLITLWEEKNTVVQNGFPMIDTDIVENKTFIPKVRIFNHGDYFILYF----------SNMYKYNKEIISENLTFYAKDTELIAIKAELT |
1VMB Chain:A ((64-122)) | ---------------------------------------------------------------------------------------------RKFAYEIKKFNEGDYTVIYFRCDGQNLQELENFYRVTPEIIRWQ-TFRRFDLEKKERKAQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VMB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -2816 for 190 contacts (-14.8/contact) +
2D Compatibility (PS) -4925 + (NN) -131 + (LL) 7476
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -4146.0 ( -21.82 by residue)
QMean score : 0.011
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