Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDYLVKALAYDGMARVYAAVTTETIKEAQRRHDTWSVSSAALGRTMTGTLFLGAMQKEDQKITVKIEGDGPIGPIVADSNAQGQIRGYVTNPHVHFSELNEAGKLDVRRGVGTSGMLSVVKDLGFGENFTGQTPIVSGEIGEDFTYYLATSEQINSSVGVGVLVNPDDTIEAAGGFMLQLLPGA-TDEIIDEIEKNLMALPTVSRMIEAGETPESILAKLAGGEDKLQILEKIPVSFECNCSKERFGSAIISLGKEEIRSMIEEDHGAEAECHFCRNTYDFSEEELKTLYEEAK |
| 1VQ0 Chain:A ((13-297)) | ---MIYYGTMFDHKVRFSIVRMREVVEEARNRHALSYLATVVLGRALIGAALVTPWLAEKERWTLDIEGNGPIRRVVAQSTSEFTVRGYVANPKVEL-PLNEKGKFDVAGAIGQ-GVLRVVRDLGLKTPFVSQVPLVSGEIAEDLAYYFAVSEQIPSAFSIGVLVDSD-GVKIAGGFAVQIIDRTLEQEKVEMIEKNIKNLPSISKLFQ-EAEPLDVLERIFG-E-KVGFVETAEIKYKCDCNREKAKNALLVLDKKELEDMR-KEGKGEVVCKWCNTRYVFSEEELEELLKFKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VQ0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162461 for 2370 contacts (-68.5/contact) +
2D Compatibility (PS) -30353 + (NN) -4637 + (LL) -28
1D Compatibility (HY) -28000 + (ID) 5250
Total energy: -230729.0 ( -97.35 by residue)
QMean score : 0.533
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