Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4M5J Chain:A ((4-138))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVR--ERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4M5J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99768 for 1009 contacts (-98.9/contact) +
2D Compatibility (PS) -14023 + (NN) -5368 + (LL) 2100
1D Compatibility (HY) -12000 + (ID) 2850
Total energy: -131909.0 ( -130.73 by residue)
QMean score : 0.461
(partial model without unconserved sides chains):
PDB file :
Tito_4M5J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5J-query.scw
PDB file :
Tito_Scwrl_4M5J.pdb
: