Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVT--NMVRTMEELQKRGLWIFGTDAKGSS-DYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK
2HA8 Chain:A ((20-176))
--------------------------------------------------------------------------------------------LGKSISRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQ-FQHLSVSAEQWLPLVEVKPPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQLDVCVEIPQQGIIRSLNVHVSGALLIWEYTRQQL----
General information:
TITO was launched using:
RESULT:
Template:
2HA8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131267 for 1191 contacts (-110.2/contact) +
2D Compatibility (PS) -17331 + (NN) -10302 + (LL) 8412
1D Compatibility (HY) -14000 + (ID) 1750
Total energy: -166238.0 ( -139.58 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_2HA8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HA8-query.scw
PDB file :
Tito_Scwrl_2HA8.pdb
: