Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEVAFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVEKINQGWFDFDVIVATPDMMGEVG-KLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGKVEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTFGPGIKVDPASL
1AD2 Chain:A ((5-228))
-----KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKACFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTTMGPSVRINPHS-
General information:
TITO was launched using:
RESULT:
Template:
1AD2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102500 for 1740 contacts (-58.9/contact) +
2D Compatibility (PS) -24646 + (NN) -16839 + (LL) 484
1D Compatibility (HY) -18800 + (ID) 6000
Total energy: -168301.0 ( -96.72 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1AD2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AD2-query.scw
PDB file :
Tito_Scwrl_1AD2.pdb
: