Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEKVIEKSVEQAGTAELAAEMREVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGARSS--EPFYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
2RD3 Chain:A ((13-216))
-----------SIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKACDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKGSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDSLTLASSKQEIEKLKEIFITTSEYEYLFWDMAYQ-----------
General information:
TITO was launched using:
RESULT:
Template:
2RD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103565 for 1548 contacts (-66.9/contact) +
2D Compatibility (PS) -21994 + (NN) -10514 + (LL) 1436
1D Compatibility (HY) -15200 + (ID) 2450
Total energy: -152287.0 ( -98.38 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_2RD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RD3-query.scw
PDB file :
Tito_Scwrl_2RD3.pdb
: