Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQYKIKEMPLEELEPKVVEGLLEHKERLGYNIPKKDTEYIGFAALSEVGEMVGG---VTAKISYGELHVSLLSVDPSTQGSGVGTELMAQIERYGRANSCHHISLTTFSYQ--APEFYRKCGFTELGRVKDFPIKGEEKYFFIKYL
3LOD Chain:A ((48-129))
---------------------------------------IALAIRSPQGEAVGCGAIVLSEEGFGEM--KRVYIDPQHRGQQLGEKLLAALEAKARQRDCHTLRLETGIHQHAAIALYTRNGY-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3LOD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37446 for 444 contacts (-84.3/contact) +
2D Compatibility (PS) -8165 + (NN) -1641 + (LL) 4904
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: -47248.0 ( -106.41 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_3LOD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LOD-query.scw
PDB file :
Tito_Scwrl_3LOD.pdb
: