Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAIISQDGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKED-NSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN
2XN9 Chain:A ((87-154))
------------------------------------------------------------------YLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLR-DSKSSDKSVCL----FTDFDSQTNVSQSKDSDVYI--
General information:
TITO was launched using:
RESULT:
Template:
2XN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1023 for 254 contacts (-4.0/contact) +
2D Compatibility (PS) -7138 + (NN) -2015 + (LL) 5804
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -9772.0 ( -38.47 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2XN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XN9-query.scw
PDB file :
Tito_Scwrl_2XN9.pdb
: