Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGEDEGEQTKTKKDSNKVVKTASRPKLSTKDLALIKADLAEFEARELSSEKILKDTIKEESWSDLDFANDNI-------NQMIGTMKRYQQEILSIDAIKRSSEASADTEAFKKIFKEWSEFKIERIQVTIDLLNGKKDSEAVFKKTYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK |
4RYL Chain:A ((39-127)) | --------------------------------------------------------------------------------HEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGT------GILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RYL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 26455 for 520 contacts (50.9/contact) +
2D Compatibility (PS) -7552 + (NN) 2239 + (LL) 10808
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: 24450.0 ( 47.02 by residue)
QMean score : 0.061
|
|
|