Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLKNINELAAKQKSEGLTAFEKERQAALRQEYLKKIRGTVQDNLHHVTIIDPLGDDVTPKKLKEIQAELRG
2JVD Chain:A ((3-48))
SNAKIARINELAAKAKAGVITEEEKAEQQKLRQEYLKGFRSSMKLE----------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8557 for 223 contacts (38.4/contact) +
2D Compatibility (PS) -5325 + (NN) -5549 + (LL) 1804
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -3513.0 ( -15.75 by residue)
QMean score : 0.686
(partial model without unconserved sides chains):
PDB file :
Tito_2JVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JVD-query.scw
PDB file :
Tito_Scwrl_2JVD.pdb
: