Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGATYLHIVDLDGALEGRPINLEVIQKMKITAKIPVQVGGGIRSMAQVDYYLESGIDRVIIGSAALTDPDFLRAAVQKYGAKIAAGIDAK--NGFVATRGWLDVSQVSYL-DLAKRMEKVGVETIIYTDISRDGTLTGPNLEQMANLKEHVKVNLIASGGVSSRADLEALAQL---GLYGAIAGKALYNHHISMSDIVE-VEQIAY
4AXK Chain:A ((5-245))
--ILPAVDVVNGQAVRLDQ-------SYGT-PLESALRWQEQGAEWLHFVDLDAAFN-RGSNHELMAEITRQLDIKVELTGGIRDDASLERALATGATRVNIGTAALEKPEWIADVIRRHGEKIAVDIAVRLENGEWRTKGN----DGGDLWEVLERLDSQGCSRFVVTDVSKDGTLTGPNVDLLRDVAAATDAPIVASGGISTLEDVLGLAKYQDEGIDSVIIGKALYEHRFTLAEALEAVEKL--
General information:
TITO was launched using:
RESULT:
Template:
4AXK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153016 for 1838 contacts (-83.3/contact) +
2D Compatibility (PS) -24730 + (NN) -10447 + (LL) 616
1D Compatibility (HY) -15600 + (ID) 4200
Total energy: -207377.0 ( -112.83 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_4AXK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AXK-query.scw
PDB file :
Tito_Scwrl_4AXK.pdb
: