Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDLFEADLPYYDVTMMSGLHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNFSIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSLNYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVELAKIF
2D5I Chain:A ((1-183))
-SKVLVLKSSIL-AGYSQSNQLSDYFVEQWREKHSADEITVRDLAANPIPVLDGELVGALRPSDA--PLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNISTQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPT---DLVTPYLSTFLGFIGITDVKFVFAEGIAYGPEMA------------------
General information:
TITO was launched using:
RESULT:
Template:
2D5I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116084 for 1373 contacts (-84.5/contact) +
2D Compatibility (PS) -19453 + (NN) -9990 + (LL) 2036
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -160541.0 ( -116.93 by residue)
QMean score : 0.595
(partial model without unconserved sides chains):
PDB file :
Tito_2D5I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5I-query.scw
PDB file :
Tito_Scwrl_2D5I.pdb
: