Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTAFDLEDFLTTAITDYAKEKVEAGTWDEEESLAKSQDSFNKLLYDGITTPNEYLYSIISGEK---IGYIWFHV--DETRSGKHAFIYDFVIFEAFRGKGFGTKTLAALDVLAKEMQITKIGLHVFAHNQTAIGLYNKVGFQNTDITMAKYL
1VKC Chain:A ((51-156))
-------------------------------------------LFESLLSQGEHKFFVALNERSELLGHVWICITLDTVDYVKIAYIYDIEVVKWARGLGIGSALLRKAEEWAKERGAKKIVLRVEIDN-PAVKWYEERGYKARALIMEK--
General information:
TITO was launched using:
RESULT:
Template:
1VKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67700 for 601 contacts (-112.6/contact) +
2D Compatibility (PS) -10517 + (NN) 288 + (LL) 3604
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -82175.0 ( -136.73 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1VKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VKC-query.scw
PDB file :
Tito_Scwrl_1VKC.pdb
: