Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNINMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLF-WEEDDNV
2LYR Chain:A ((5-66))
----NLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE---
General information:
TITO was launched using:
RESULT:
Template:
2LYR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17315 for 389 contacts (-44.5/contact) +
2D Compatibility (PS) -6470 + (NN) -2483 + (LL) 432
1D Compatibility (HY) -6400 + (ID) 1450
Total energy: -33686.0 ( -86.60 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2LYR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYR-query.scw
PDB file :
Tito_Scwrl_2LYR.pdb
: