Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKDGFEKDSVILLEQIRTID-KQRLTDKITHLDEDLMAKVNKALEVSLGVVEF
1M1F Chain:A ((1-101))
--MERGEIWLVSLDPTAGHEQQGTRPVLIVTPAAFNRVTRLPVVVPVTS---FARTAGFAVSLDGVGIRTTGVVRCDQPRTIDMKARGGKRLERVPETIMNEV-------------
General information:
TITO was launched using:
RESULT:
Template:
1M1F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37494 for 666 contacts (-56.3/contact) +
2D Compatibility (PS) -10183 + (NN) 419 + (LL) 1968
1D Compatibility (HY) -5200 + (ID) 1500
Total energy: -51990.0 ( -78.06 by residue)
QMean score : 0.454
(partial model without unconserved sides chains):
PDB file :
Tito_1M1F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M1F-query.scw
PDB file :
Tito_Scwrl_1M1F.pdb
: