Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFLPFIVFVVVNVNAYGLLIGFLISVIAAIAGSLC--VFLLARKFGQTRFLRFISGHKQIKRVMEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYIGYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK
1A8Y Chain:? ((127-235))
VELIEGERELQAFENIEDEIKLIGYFKNKDS--EHYKAFKEAAEEFHPYIPFFATFDSKVAKKLTLKLNEIDFYEAFMEEPVTIPDKPNSEEEIVNFVEEHRRS------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1A8Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122115 for 688 contacts (-177.5/contact) +
2D Compatibility (PS) -10688 + (NN) -3546 + (LL) 9708
1D Compatibility (HY) -800 + (ID) 650
Total energy: -128091.0 ( -186.18 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_1A8Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A8Y-query.scw
PDB file :
Tito_Scwrl_1A8Y.pdb
: