Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFITGNAGTVFGEWAVVEPLLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRDQVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEPPSAQPVIVEDNVVVGAN------------VVVLEGVRIGE-------------------GAVVAAGAIVTKDVAPGTVVAGIPARELKKLDAKTASKTEIMQELRQL
3TDT Chain:A ((104-273))
--------------------------------------------------------------------------------------------RVVPPATVRQGAFIARNTV-LMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSKDGSYSLYCAVI----VKKVDAKTRGKVGINELLRTI
General information:
TITO was launched using:
RESULT:
Template:
3TDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117145 for 995 contacts (-117.7/contact) +
2D Compatibility (PS) -15312 + (NN) -4684 + (LL) 6812
1D Compatibility (HY) -10800 + (ID) 2800
Total energy: -143929.0 ( -144.65 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3TDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDT-query.scw
PDB file :
Tito_Scwrl_3TDT.pdb
: