Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFLGKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKIQ
1LSU Chain:A ((13-144))
----FAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSDEN-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LSU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112785 for 1018 contacts (-110.8/contact) +
2D Compatibility (PS) -13947 + (NN) -825 + (LL) 5880
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -138977.0 ( -136.52 by residue)
QMean score : 0.689
(partial model without unconserved sides chains):
PDB file :
Tito_1LSU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LSU-query.scw
PDB file :
Tito_Scwrl_1LSU.pdb
: