Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHE-AGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTDKLI-LSDKDTKHPRLKDAENNFVWENK
1DZR Chain:A ((2-179))
MIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKS-KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPFSQLPELSAKDAAAPLLDQA---------
General information:
TITO was launched using:
RESULT:
Template:
1DZR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75252 for 1350 contacts (-55.7/contact) +
2D Compatibility (PS) -19030 + (NN) -6701 + (LL) 704
1D Compatibility (HY) -18400 + (ID) 4250
Total energy: -122929.0 ( -91.06 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1DZR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DZR-query.scw
PDB file :
Tito_Scwrl_1DZR.pdb
: