Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VKITTASHGGNYNELAKQHGLTKEMVLDFSANINPLGVPASLKQTITANLDKLVEYPEPDYLALRARIASFHQLDLANVIPGNGATELIFGIAKVTKA------QKVLLLAPTFAEYERAFFDAEIVYAELTKETNFAAVEIVLE-ILERDTEIEAVCLCNPNNPTGQLIAQQEMIKIADLCEKRNIYLIIDEAFMDFLEENETISMINNLERFPHVAIIRAFTKFFAIPGLRLGYLLTKNDLLAEALMQMREPWSINT-FADLAGQMLL-EDEAYIRQTFDWINEERDFLYRGLSRFSAL-TVYRPTVNYIFFHLEKPLDLRKELLLKGIFIRSCANYRGLTENYYRVAVKSRADNSQLLTALEVIFSGN |
1GEW Chain:A ((34-351)) | ----------------------------LNANEYPTAVEFQLTQ------QTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADE---GIELLIRAFCEPGKDAILYCPPTYGMYS---VSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAI-VVADEAYIEFCPQ---ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI-NLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRD-QNKQPSLSGCLRITVGTREESQRVIDAL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GEW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -209304 for 2568 contacts (-81.5/contact) +
2D Compatibility (PS) -33378 + (NN) -13474 + (LL) 3844
1D Compatibility (HY) -27200 + (ID) 4550
Total energy: -284062.0 ( -110.62 by residue)
QMean score : 0.444
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