Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
3W6V Chain:A ((40-133))
---------------------------------------------------------------------------------LAEVVAWALEHLHEQFDVETLAARAYMSRRTFDRRFRSLTGSAPLQWLITQRVLQAQRLLETSDYSVDEVAGRCGFRSPVALRGHFRRQLGSSP--------
General information:
TITO was launched using:
RESULT:
Template:
3W6V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52564 for 647 contacts (-81.2/contact) +
2D Compatibility (PS) -9806 + (NN) -4329 + (LL) 5448
1D Compatibility (HY) -4800 + (ID) 950
Total energy: -67001.0 ( -103.56 by residue)
QMean score : 0.716
(partial model without unconserved sides chains):
PDB file :
Tito_3W6V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W6V-query.scw
PDB file :
Tito_Scwrl_3W6V.pdb
: