Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKIIIATANKGKAKEFEKIFAKF-NIEVATLA-DFPEIGEIEETGTTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGVAHDDAKNNEKLLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTN-GFGYDPLFFLPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLVEVVEKVTKK
1B78 Chain:A ((10-193))
--KIYFATGNPNKIKEANIILKDLKDVEIEQIKISYPEIQ------GTLEEVAEFGAKWVYNILKKPVIVEDSGFFVEALNGFPGTYSK-----FVQETIGNEGILKLLEG--KDNRNAYFKTVIGYCDEN-GVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERTFAEMTTEEKSQISHRKKAFEEFKKFLLDRI------
General information:
TITO was launched using:
RESULT:
Template:
1B78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85605 for 1415 contacts (-60.5/contact) +
2D Compatibility (PS) -19830 + (NN) -10601 + (LL) 1872
1D Compatibility (HY) -15200 + (ID) 3250
Total energy: -132614.0 ( -93.72 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1B78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1B78-query.scw
PDB file :
Tito_Scwrl_1B78.pdb
: