Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGVDTENDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLA---NSLELDQSDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKKGLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKLSTADDVKEVMS----AIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMMLAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSDKNAKGAQDAHEAIRPTSAMRSPQEVKEYLTRDQLRLYRLIWERFIASQMTPAVLDTMRVDLDNNGVNFRANGSKIK--FHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQRQHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEIVNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEMEKIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEKGHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCTNCDYKESTQQ |
| 2GAI Chain:A ((9-586)) | -----IVVESPAKAKTIKSILGNEYEVFASMGHIIDLPKSKFGVDLEKDFEPEFAVIKGKEKVVEKLKDLAKKGE-LLIASDMDREGEAIAWHIARVTNTL----GRKNRIVFSEITPRVIREAVKNPREIDMKKVRAQLARRILDRIVGYSLSPVLWRNFKSNLSAGRVQSATLKLVCDREREILRFVPKKYHRITVN-------FDGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA-------PPEPFKTSTLQQEAYSKLGFSVSKTMMIAQQLYEGVET-KDGHIAFITYMRTDSTRVSDYAKEEARNLITEVFGEEYVG--------------AHEAIRPTNVFMTPEEAGKYLNSDQKKLYELIWKRFLASQMKPSQYEETRFVLRTKDGKYRFKGTVLKKIFDGYEKVW------KTERNTGEFP-FEEGESVKPVVVKIEEQETKPKPRYTEGSLVKEMERLGIGRPSTYASTIKLLLNRGYIKKIRGYLYPTIVGSVVMDYLEKKYSDVVSVSFTAEMEKDLDEVEQGKKTDKIVLREFYESFSSVFDRND----RI-VVDFPTNQKCS-CGKEMRLSFGKYGFYLKC----ECGKTRSV--------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GAI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -148902 for 4429 contacts (-33.6/contact) +
2D Compatibility (PS) -59091 + (NN) -12374 + (LL) 7744
1D Compatibility (HY) -50800 + (ID) 12950
Total energy: -276373.0 ( -62.40 by residue)
QMean score : 0.461
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