Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VQQINWKKNVSFRSGSPAFTLLETILSITIILSISLLIPLFFQCYNKTIQLSNIDQTTEWQLFLIQTRLELEKATNIQIDGNKLSFSNGKDLITYSKYNDLVRRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP
3SOK Chain:A ((1-28))
------------------FTLIELMIVVAIIGILAAFAIPAYNDYI-------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3SOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11767 for 111 contacts (-106.0/contact) +
2D Compatibility (PS) -2967 + (NN) -630 + (LL) 8472
1D Compatibility (HY) -2400 + (ID) 350
Total energy: -9642.0 ( -86.86 by residue)
QMean score : 0.009
(partial model without unconserved sides chains):
PDB file :
Tito_3SOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SOK-query.scw
PDB file :
Tito_Scwrl_3SOK.pdb
: