Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKKIDWRDERGFTLVEMLIVLLVVSVLLLLTIPNIVSQSKSINDKGCEAFISMVQGQVQSYQLDKNSIP-SVADLVS----------------GGYLKANQKSCPNGNSIKIDSSGNVSEKK
2KEP Chain:A ((42-114))
----------------------------------------PDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGN-PYQY----------
General information:
TITO was launched using:
RESULT:
Template:
2KEP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1897 for 300 contacts (-6.3/contact) +
2D Compatibility (PS) -5975 + (NN) -660 + (LL) 4368
1D Compatibility (HY) -1600 + (ID) 500
Total energy: -6264.0 ( -20.88 by residue)
QMean score : 0.274
(partial model without unconserved sides chains):
PDB file :
Tito_2KEP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KEP-query.scw
PDB file :
Tito_Scwrl_2KEP.pdb
: