Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTTSPFSLKSRSLKFKWTFGASAAIFLTFFLFSYAIYQGIGQMLLNEEEPEVKELLLATTSTLTNQDLTDNEEIKYLFNNDKTVNRKLQDQVINLYDKDGHFINKYYFSRSQDITSIDFSQYFVSGTDKFIMNKPTIDGQKMMTAQMPIVADDNTTVIGYAQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRLARTMNDIRKNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRTPVQIMEGHLKLLTRWGKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQ----ISQTKELQITDVNATVEQVRRN--FEVMYENFTFTLKEDDTDLRALIQHNHLEQILIIIMDNAVKYSGDGTEVDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAKQLVEGYLGTINAVSEPDKGTTIKITLPYIEPKSK |
4BIV Chain:A ((30-293)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PARKLKNAADEVAQGNLRQHPELEAGPQEFLA-AGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGES-----KELERIETEAQRLDSMINDLLVMSRNQQKNALVSET-----IKANQLWSEVLDNAAFEAEQMGKSLTVNFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDG--ITITVDDDGPGVSPEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIWLP------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4BIV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -51784 for 1851 contacts (-28.0/contact) +
2D Compatibility (PS) -28171 + (NN) -15845 + (LL) 16708
1D Compatibility (HY) -11200 + (ID) 4100
Total energy: -94392.0 ( -51.00 by residue)
QMean score : 0.365
|
|
|