Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKKNIILISVLLGALLLLTGCSMDPSQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAIIITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRATSKEEQATIQKEMMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIAS-HTFLWF-NLGSPD--MVLAIIAGLVYLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVSFTAPSALALYWAVGGLFLAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK
3WVF Chain:A ((326-528))
--------------------------LTVDYGWL-WFISQPLFKLLKWIHSFVG-NWGFSIIIITFIVRGIMYPLTKAQYTS----MAKMRMLQPKIQAMRERLGDD-----KQRISQEMMALYKAEKVNPLG-GCFPLLIQMPIFLALYYMLMGSVELRQAPFALWIHDLSAQDPYYILPILMGVTMFFIQ----------------KIMTFMPVIFTVFFLWFPSGLVLYYIVSNLVTIIQQ-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3WVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146604 for 1289 contacts (-113.7/contact) +
2D Compatibility (PS) -19937 + (NN) -7096 + (LL) 7684
1D Compatibility (HY) -26000 + (ID) 3100
Total energy: -195053.0 ( -151.32 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3WVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3WVF-query.scw
PDB file :
Tito_Scwrl_3WVF.pdb
: