Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGLARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLPK
4TKR Chain:B ((29-213))
MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGASCLGTVLVSGIIISILLKTSPKLFLP-
General information:
TITO was launched using:
RESULT:
Template:
4TKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -195660 for 1505 contacts (-130.0/contact) +
2D Compatibility (PS) -19217 + (NN) -4355 + (LL) 64
1D Compatibility (HY) -37200 + (ID) 9200
Total energy: -265568.0 ( -176.46 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_4TKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TKR-query.scw
PDB file :
Tito_Scwrl_4TKR.pdb
: