Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VAKFTYDVVIIGSGASGTTVAFEAQAA-GLKVAIVEERN---------WGGTCVLRGCDPKKVLIGAREARNLSTRLRGKGI---KQAATISWTDLMAFKETFVENVPESRLASFQEA-GIETFFGAASFQDSHSLQVGD---------DLIYAEKIVIATGATPSTLKVEGKEYIQTSDDFLSLEKLPDSVVFIGGGYISFEFASI---ALAAGRDVHIIHHNSEPLKKFDPDFVAALVANIKDEGIHFHFDTDITKI-ENDGGKLHIKGKDSFSLQTDLIIGATGRMPNIAHLSLENASIDYTKKGIVVNEKLQTPNNPHIYACGDVAATKGAPLTPVVSLEAALVAKNVIGVNEKIT-YPAIPSVVFTSPKLASIGISTEEAKANPEKYQIKNHDTTS-WYTYKRTNEQIALAKIIEDRESGQIKGAHFLSEEADYMINYIAILMKANLTLADLQSVIFAYPSPASDLTALN |
2YAU Chain:A ((25-491)) | -----YDLVVLGAGSGGLEAGWNAAVTHKKKVAVVDVQATHGPPLFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEMDRESLCPNWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYVDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDV--TNRVMLTPVAINEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNYETVAVYASSFTPLMHNISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHSTIGVHPTSAEELCSM- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YAU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -224244 for 3721 contacts (-60.3/contact) +
2D Compatibility (PS) -46699 + (NN) -13089 + (LL) 792
1D Compatibility (HY) -26000 + (ID) 6600
Total energy: -315840.0 ( -84.88 by residue)
QMean score : 0.395
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