Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKPIVVGVTGGSGSGKTSVTKAICN-------HFSGHSILMIAQDVYYHDQANISFEDRLK--VNYDHPLAFDTDLLISHIAALRRYESIEKPIYDYAKYTRKKEVEIQEPREVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDMKERGRTMDSVIEQYLSVVKPMHNEFIEPTKKFADIIIPEGGENHVAIDLMTTKIESILQKHV
1UFQ Chain:A ((19-229))
---EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDIL----
General information:
TITO was launched using:
RESULT:
Template:
1UFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94032 for 1544 contacts (-60.9/contact) +
2D Compatibility (PS) -22063 + (NN) -8432 + (LL) 744
1D Compatibility (HY) -21200 + (ID) 4000
Total energy: -148983.0 ( -96.49 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_1UFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UFQ-query.scw
PDB file :
Tito_Scwrl_1UFQ.pdb
: