Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATD----KIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLNGYDRLILMKL
1G2Q Chain:A ((19-172))
--------------NFPSEGILFEDFLPIFRNPGLFQKLIDAFKLHLEEAFPEVKIDYIVGLESRGFLFGPTLALALGVGFVPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLLEYNFVMELDFLKGRSKLNA---------
General information:
TITO was launched using:
RESULT:
Template:
1G2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101273 for 1103 contacts (-91.8/contact) +
2D Compatibility (PS) -15732 + (NN) 30 + (LL) 2588
1D Compatibility (HY) -14800 + (ID) 3150
Total energy: -132337.0 ( -119.98 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_1G2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G2Q-query.scw
PDB file :
Tito_Scwrl_1G2Q.pdb
: