Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRL-EGTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEADLTSDAYIKLALQLMTK
2ZTE Chain:A ((5-131))
----VRGEVLEVALDHVVIEAAGVGYRV-NATPATLATLRQGTEARLITAMIVREDSMTLYGFPDGETRDLFLTLLSVSGVGPRLAMAALAVHDAPALRQVLADGNVAALTRVPGIGKRGAERMVLELRDKV----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2ZTE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80736 for 938 contacts (-86.1/contact) +
2D Compatibility (PS) -13711 + (NN) -5532 + (LL) 7004
1D Compatibility (HY) -10000 + (ID) 2300
Total energy: -105275.0 ( -112.23 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_2ZTE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ZTE-query.scw
PDB file :
Tito_Scwrl_2ZTE.pdb
: