Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSNYQDADFVQAGAKIVETAKEAWDVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTLAKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLGGVPGVERSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLMSNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVVKQMIPGSVLVDIAIDQGGIFETTDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLEAAVQNDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI |
1PJB Chain:A ((1-353)) | MEIGVPKEIKNQEFRVGLSPSSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSREMVVKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETL-HPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLANQGLK-ALETDDALAKGLNVQAHRLVHPAV--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1PJB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -224755 for 3067 contacts (-73.3/contact) +
2D Compatibility (PS) -37863 + (NN) -8250 + (LL) 832
1D Compatibility (HY) -40000 + (ID) 9950
Total energy: -319986.0 ( -104.33 by residue)
QMean score : 0.545
|
|
|