Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGEKMAIWRTKKPATKQKIVSDLQELGIKKGDTIIFHASMSKAHWICGGPVTVILALQELVGELGNIVMPAQTGQLSDPAKWENPPVPESWWKIIRRETPPFDPLVTPTRGMGVIAETFRTMPDVERSFHPYHSFCAWGKDKKQILANQPLAKSMGDESPLGKMYQLDAKIILFGVDNNNNTSLHLAEERSNAFPLIENQAAFL---KNGEIIWEKYQEIDYNSEVFIALGRAYEKEHDFHPTTIIG-APTKIYDMRDLVDFGTKYFQTKNH |
| 3SMA Chain:A ((19-274)) | ----------RELVTRDRLASDLAALGVRPGGVLLVHASLSALGWVCGGAQAVVLALQDAVGKEGTLVMPTFSGDLSDPSTWRRPPVPEDWWPVIREQMPPFDPDLTPTRGMGAVAECFRRAAGAVRSGHPQNSFAAWGAHAEQVVAEHGLTERLGRGSPLEQVYRLDGQVLLLGCGFESNTSFHLAEYRT-AYPGRRSHRRRVPVPEGDRVRWVEQEDIVYFEEDFQTMGESCLTRTPGHSRGTVGEAAAVLYGQRAFVDLACEWM----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SMA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -95653 for 2088 contacts (-45.8/contact) +
2D Compatibility (PS) -27305 + (NN) -11469 + (LL) 1188
1D Compatibility (HY) -17600 + (ID) 5050
Total energy: -155889.0 ( -74.66 by residue)
QMean score : 0.472
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