Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTFFKKLKDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARYRKVDED--FFEELEEILIGADVGFETVMELVDTLRREVQLRNISDPKDVQEVIVEKLVEIYQGDEKEDEALHIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFRAGAIDQLEVWGERTGVDVIKQAEGSDP--AAVMFDAVQAAKARKADILLCDTAGRLQNKVNLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLDGTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYVYGLFADMVDNEK |
4AK9 Chain:A ((86-382)) | -----------------------SGFSKTRENLA-VVDELLT-YWNLDESESILDELEEVLLVSDFGPKTALKIVDTIRKDILAGRLKSGPQIKEALKKNIFKLLTERVTTTE-LQLGNSRPAVLMIVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDT--AAAGEQLEVWAQRTGSEIV-MA----PRPAAVLSQAVRRAVEEDFDVVLCDTSGRLHTNYNLMEELRGCKRAVSKALSSAPNEVLLVLDGTTGLNMLAQAREFNQVIGVTGFILTKLDGTARGGCVVSVVDELSIPVKFVGVGEGIDDLQPFDAQSFVDALF-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AK9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181616 for 2475 contacts (-73.4/contact) +
2D Compatibility (PS) -31152 + (NN) -18415 + (LL) 2252
1D Compatibility (HY) -30400 + (ID) 6750
Total energy: -266081.0 ( -107.51 by residue)
QMean score : 0.557
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