Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLQGKVAVVTGGSRGIGRDIAINLAKEGANIFFNYNGSPEAAEETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNAGITRDNLLMRMKEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKAGVIGLTKTTARELAPRGINVNAVAPGFITTDMTDKLDEKTKEAMLAQIPLGAYGTTEDIANAVLFLA-SDASKYITGQTLSVDGGMVM
1EDO Chain:A ((3-244))
------VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGIAI
General information:
TITO was launched using:
RESULT:
Template:
1EDO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119643 for 2121 contacts (-56.4/contact) +
2D Compatibility (PS) -25733 + (NN) -2779 + (LL) 448
1D Compatibility (HY) -24000 + (ID) 6600
Total energy: -178307.0 ( -84.07 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_1EDO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EDO-query.scw
PDB file :
Tito_Scwrl_1EDO.pdb
: