Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVFVDGASAGNPGPSGAGIVLKADGIYEQFAIPLAVMTNHEAEFIAIKLGLEEALKKQATLIRLYSDSKVAIEAI-------HKRHAKNPLFKP--HLDAILEMADSLELFFAEWRNVS------QNKQADQLARQAIKKQKQPGVK
1GOB Chain:A ((5-140))
VEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVAL-EALKEHCEVI-LSTDSQYVRQAITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAA----------
General information:
TITO was launched using:
RESULT:
Template:
1GOB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56742 for 900 contacts (-63.0/contact) +
2D Compatibility (PS) -13252 + (NN) -7333 + (LL) 784
1D Compatibility (HY) -3200 + (ID) 2200
Total energy: -81943.0 ( -91.05 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_1GOB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GOB-query.scw
PDB file :
Tito_Scwrl_1GOB.pdb
: