Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQVLVGYWHSWKSSGKDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRAVLLALGGADGHVEL-KAGDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTV----------IPAALKIVKDHYKAEGKNFLITMAPEFPYLKPG-SAYES----YLTSLANYYD---YIAPQLYNQG-GDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVTDPQIVKNVFTRLQAKGTP---------------VKGIMTWSVNWDAGKNKAGVPYNNSFSNAYGPIVGTK |
| 3N11 Chain:A ((34-349)) | -------------------------------------------KLLVGYWHN--------FDNGTGI-IKLKDVSPKWDVINVSFGETGGDRSTVEFSPVYGTDADFKSDISYLKSKGKKVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHY---GPDFLLSMAPETAYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYNAGSGIGMDGNNYNQGTADYEVAMADMLLHGFPVGG-NANNIFPALRSDQVMIGLPAAPAAAPSGGYISPTEMKKALNYI-IKGVPFGGKYKLSNQSGYPAFRGLMSWSINWDA-KN------NFEFSNNY------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3N11.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -122955 for 2274 contacts (-54.1/contact) +
2D Compatibility (PS) -29573 + (NN) -10433 + (LL) 2504
1D Compatibility (HY) -21600 + (ID) 5300
Total energy: -187357.0 ( -82.39 by residue)
QMean score : 0.464
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