Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MELLNRTEKLLLQNEKNWELYLSNREEAKPFDFYKDMKPFVDEAKNSADAFLELA-------------IPWVNKERPPYLG----ELQLRQACDNVQMTAVSAFNGKSFYKHFLDHYQSTKYTLTRVRDFLKRKEELM |
2VHA Chain:A ((15-108)) | ---------------KNGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLLQNGTFDFECGSTTNNVERQKQAAFSDTIF----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VHA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 13942 for 470 contacts (29.7/contact) +
2D Compatibility (PS) -8003 + (NN) -350 + (LL) 4168
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: 3957.0 ( 8.42 by residue)
QMean score : 0.027
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